FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n01_MGT1_col_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n01_MGT1_col_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4737349
Sequences flagged as poor quality0
Sequence length76
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCAGTCC9700.019.84526670
CACACGG6400.017.49991870
TCACTGC14750.016.13551770
GAGCACC17400.014.08039470
GTCCCCC2000.00277865812.2529171
AAGAGCC24650.011.64294770
CTGACCC6159.094947E-1211.38206170
CCCGTCG2802.3471512E-411.24994770
CGGAAGC21600.011.18050470
CTGAACG5006.156188E-810.4999570
CACGTCG4956.0443745E-79.89894470
CTGACCA57400.09.81702870
ACTGACC65600.09.81702770
CACTGAC77150.09.66294970
CCTGGAC4804.364658E-69.47902264
TGACCAA55300.09.30375470
AGTCACG5552.8661289E-68.82878870
CAGTCAC134850.08.69480570
ATCGCGG4057.103424E-48.64193470
CGTCTGC11950.08.49368470
Produced by FastQC (version 0.11.5)