FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n01_LHY1_col_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n01_LHY1_col_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4902642
Sequences flagged as poor quality0
Sequence length76
%GC27

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCAGG900.005271884619.4491561
CACACGG3401.9826984E-1015.44113870
GAGCACC6550.013.35874670
CGGAAGC8300.012.22888670
CCAGTCC3358.373534E-611.49250970
CCCCCTC2802.3446932E-411.2512342
ACCGATG20900.09.54543170
CCGATGT16600.09.48792870
GTCACCC3100.00684597169.03223570
GTATCGG5603.2355092E-68.74997870
CACCGAT23800.08.67644969
AGTCACC36050.08.64075570
GTCACCG28800.08.14234170
CGATGTA17200.08.13951470
TCCAGTC51400.08.10309370
CAGTCAC41550.07.7496870
TCACCGA29050.07.59034369
CGTCTGC5108.207639E-47.549000770
CTCCAGT57150.07.349063469
AAGAGCC11151.4897523E-97.21971370
Produced by FastQC (version 0.11.5)