FastQCFastQC Report
Tue 4 Dec 2018
H7HWGAFXY_n01_LHY1_c24_b-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HWGAFXY_n01_LHY1_c24_b-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2671004
Sequences flagged as poor quality0
Sequence length76
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCCTC800.002664055721.8806651
CGGAAGC3103.522844E-612.41954870
CAGTCAC6959.240466E-109.56849470
CCAGTCA7655.4023985E-109.150640569
TCCAGTC7705.857146E-98.63649868
AAGAGCC3900.0048560878.07704870
CACGTCT23450.07.46280270
ACACGTC24650.07.3836269
CTCCAGT9201.3725185E-77.228372667
CGTCTGA18850.07.055812468
ACGTCTG20050.06.808213769
CACACGT28600.06.608494368
TGAACTC16903.6379788E-126.42021870
GAACTCC11054.8476613E-76.334939567
TCTGAAC19400.06.314531370
ATTCCTC6150.00588646626.26119762
CTGAACT17002.2009772E-105.97079369
GCACACG28150.05.96823269
ACTCCAG12608.139177E-75.83353369
AGCACAC32650.05.681558670
Produced by FastQC (version 0.11.5)