FastQCFastQC Report
Tue 18 Dec 2018
H7HVFAFXY_n01_AP2-G02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7HVFAFXY_n01_AP2-G02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2323505
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGACCGC1401.8659355E-417.5009546
GTATAGA11050.016.1550711
TCCGCAC4750.015.47319464
TCGGTCG1859.0431065E-515.1346579
GTATATA24400.014.7757121
CCGCACC4750.014.73637665
CTAATAC10700.014.7204273
CGCACCT5000.014.70048466
GACCGCG1450.004742834314.4822997
GGACCGT2202.4549912E-514.3189616
TATACAG14850.014.1421845
ACGCGGT3758.60382E-1014.00015951
ACTATGC10300.013.9315988
TACACAG7400.013.7169645
GTCTTAG5750.013.3923231
GTATTAG10850.013.226811
TATACCG6850.012.7744195
TCTATAC10450.012.7279653
GTCTAAG6750.012.445391
ACCGAGC2254.7533374E-412.4440518
Produced by FastQC (version 0.11.5)