[2022-12-09 21:05:42,670] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2022-12-09 21:05:42,670] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2022-12-09 21:05:42,670] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2022-12-09 21:05:42,671] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2022-12-09 21:05:42,671] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2022-12-09 21:05:42,671] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H7HTGBGXN/merged
[2022-12-09 21:05:43,198] multiqc [WARNING] MultiQC Version v1.13 now available!
[2022-12-09 21:05:43,198] multiqc [INFO ] This is MultiQC v1.9
[2022-12-09 21:05:43,198] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H7HTGBGXN/merged
[2022-12-09 21:05:43,198] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H7HTGBGXN/merged
[2022-12-09 21:05:43,198] multiqc [INFO ] Template : default
[2022-12-09 21:05:43,199] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2022-12-09 21:05:43,199] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H7HTGBGXN/merged
[2022-12-09 21:05:43,199] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2022-12-09 21:05:43,199] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-27962755/tmpy6pxh2lv
[2022-12-09 21:05:43,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK157_fastqc.html
[2022-12-09 21:05:43,314] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK157_fastqc.html
[2022-12-09 21:05:43,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-12-09 21:05:43,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-12-09 21:05:43,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO55_fastqc.html
[2022-12-09 21:05:43,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO55_fastqc.html
[2022-12-09 21:05:43,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ14_fastqc.html
[2022-12-09 21:05:43,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ14_fastqc.html
[2022-12-09 21:05:43,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO57_fastqc.html
[2022-12-09 21:05:43,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO57_fastqc.html
[2022-12-09 21:05:43,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ13_fastqc.html
[2022-12-09 21:05:43,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ13_fastqc.html
[2022-12-09 21:05:43,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO54_fastqc.html
[2022-12-09 21:05:43,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO54_fastqc.html
[2022-12-09 21:05:43,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ21_fastqc.html
[2022-12-09 21:05:43,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ21_fastqc.html
[2022-12-09 21:05:43,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ19_fastqc.html
[2022-12-09 21:05:43,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ19_fastqc.html
[2022-12-09 21:05:43,775] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK160_fastqc.html
[2022-12-09 21:05:43,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK160_fastqc.html
[2022-12-09 21:05:43,815] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO51_fastqc.html
[2022-12-09 21:05:43,817] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO51_fastqc.html
[2022-12-09 21:05:43,855] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ17_fastqc.html
[2022-12-09 21:05:43,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ17_fastqc.html
[2022-12-09 21:05:43,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ20_fastqc.html
[2022-12-09 21:05:43,898] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ20_fastqc.html
[2022-12-09 21:05:43,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ15_fastqc.html
[2022-12-09 21:05:43,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ15_fastqc.html
[2022-12-09 21:05:43,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO53_fastqc.html
[2022-12-09 21:05:43,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO53_fastqc.html
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[2022-12-09 21:05:44,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO52_fastqc.html
[2022-12-09 21:05:44,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO56_fastqc.html
[2022-12-09 21:05:44,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_DO56_fastqc.html
[2022-12-09 21:05:44,104] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK162_fastqc.html
[2022-12-09 21:05:44,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK162_fastqc.html
[2022-12-09 21:05:44,145] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_undetermined_fastqc.html
[2022-12-09 21:05:44,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_undetermined_fastqc.html
[2022-12-09 21:05:44,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ16_fastqc.html
[2022-12-09 21:05:44,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ16_fastqc.html
[2022-12-09 21:05:44,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK161_fastqc.html
[2022-12-09 21:05:44,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK161_fastqc.html
[2022-12-09 21:05:44,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK159_fastqc.html
[2022-12-09 21:05:44,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK159_fastqc.html
[2022-12-09 21:05:44,306] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ18_fastqc.html
[2022-12-09 21:05:44,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_YZ18_fastqc.html
[2022-12-09 21:05:44,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK158_fastqc.html
[2022-12-09 21:05:44,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7HTGBGXN_n01_JK158_fastqc.html
[2022-12-09 21:05:44,685] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2022-12-09 21:05:44,687] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2022-12-09 21:05:44,696] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2022-12-09 21:05:44,705] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2022-12-09 21:05:44,717] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 23 samples (table)
[2022-12-09 21:05:44,724] multiqc [DEBUG ] No samples found: conpair
[2022-12-09 21:05:44,731] multiqc [DEBUG ] No samples found: peddy
[2022-12-09 21:05:44,740] multiqc [DEBUG ] No samples found: somalier
[2022-12-09 21:05:44,746] multiqc [DEBUG ] No samples found: methylQA
[2022-12-09 21:05:44,759] multiqc [DEBUG ] No samples found: mosdepth
[2022-12-09 21:05:44,764] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2022-12-09 21:05:44,767] multiqc [DEBUG ] No samples found: qualimap
[2022-12-09 21:05:44,774] multiqc [DEBUG ] No samples found: preseq
[2022-12-09 21:05:44,780] multiqc [DEBUG ] No samples found: quast
[2022-12-09 21:05:44,787] multiqc [DEBUG ] No samples found: qorts
[2022-12-09 21:05:44,792] multiqc [DEBUG ] No samples found: rna_seqc
[2022-12-09 21:05:44,799] multiqc [DEBUG ] No samples found: rockhopper
[2022-12-09 21:05:44,804] multiqc [DEBUG ] No samples found: rsem
[2022-12-09 21:05:44,820] multiqc [DEBUG ] No samples found: rseqc
[2022-12-09 21:05:44,824] multiqc [DEBUG ] No samples found: busco
[2022-12-09 21:05:44,830] multiqc [DEBUG ] No samples found: goleft_indexcov
[2022-12-09 21:05:44,834] multiqc [DEBUG ] No samples found: disambiguate
[2022-12-09 21:05:44,840] multiqc [DEBUG ] No samples found: supernova
[2022-12-09 21:05:44,855] multiqc [DEBUG ] No samples found: deeptools
[2022-12-09 21:05:44,860] multiqc [DEBUG ] No samples found: sargasso
[2022-12-09 21:05:44,865] multiqc [DEBUG ] No samples found: verifybamid
[2022-12-09 21:05:44,871] multiqc [DEBUG ] No samples found: mirtrace
[2022-12-09 21:05:44,876] multiqc [DEBUG ] No samples found: happy
[2022-12-09 21:05:44,880] multiqc [DEBUG ] No samples found: mirtop
[2022-12-09 21:05:44,888] multiqc [DEBUG ] No samples found: homer
[2022-12-09 21:05:44,893] multiqc [DEBUG ] No samples found: macs2
[2022-12-09 21:05:44,897] multiqc [DEBUG ] No samples found: theta2
[2022-12-09 21:05:44,903] multiqc [DEBUG ] No samples found: snpeff
[2022-12-09 21:05:44,910] multiqc [DEBUG ] No samples found: gatk
[2022-12-09 21:05:44,914] multiqc [DEBUG ] No samples found: htseq
[2022-12-09 21:05:44,921] multiqc [DEBUG ] No samples found: bcftools
[2022-12-09 21:05:44,926] multiqc [DEBUG ] No samples found: featureCounts
[2022-12-09 21:05:44,933] multiqc [DEBUG ] No samples found: fgbio
[2022-12-09 21:05:44,948] multiqc [DEBUG ] No samples found: dragen
[2022-12-09 21:05:44,954] multiqc [DEBUG ] No samples found: dedup
[2022-12-09 21:05:44,962] multiqc [DEBUG ] No samples found: damageprofiler
[2022-12-09 21:05:44,991] multiqc [DEBUG ] No samples found: biobambam2
[2022-12-09 21:05:44,997] multiqc [DEBUG ] No samples found: mtnucratio
[2022-12-09 21:05:44,999] multiqc [DEBUG ] No samples found: picard
[2022-12-09 21:05:45,005] multiqc [DEBUG ] No samples found: prokka
[2022-12-09 21:05:45,011] multiqc [DEBUG ] No samples found: samblaster
[2022-12-09 21:05:45,025] multiqc [DEBUG ] No samples found: samtools
[2022-12-09 21:05:45,034] multiqc [DEBUG ] No samples found: sexdeterrmine
[2022-12-09 21:05:45,041] multiqc [DEBUG ] No samples found: bamtools
[2022-12-09 21:05:45,049] multiqc [DEBUG ] No samples found: jellyfish
[2022-12-09 21:05:45,059] multiqc [DEBUG ] No samples found: vcftools
[2022-12-09 21:05:45,065] multiqc [DEBUG ] No samples found: longranger
[2022-12-09 21:05:45,073] multiqc [DEBUG ] No samples found: stacks
[2022-12-09 21:05:45,080] multiqc [DEBUG ] No samples found: varscan2
[2022-12-09 21:05:45,097] multiqc [DEBUG ] No samples found: bbmap
[2022-12-09 21:05:45,103] multiqc [DEBUG ] No samples found: bismark
[2022-12-09 21:05:45,112] multiqc [DEBUG ] No samples found: biscuit
[2022-12-09 21:05:45,118] multiqc [DEBUG ] No samples found: hicexplorer
[2022-12-09 21:05:45,125] multiqc [DEBUG ] No samples found: hicup
[2022-12-09 21:05:45,130] multiqc [DEBUG ] No samples found: hicpro
[2022-12-09 21:05:45,136] multiqc [DEBUG ] No samples found: salmon
[2022-12-09 21:05:45,142] multiqc [DEBUG ] No samples found: kallisto
[2022-12-09 21:05:45,149] multiqc [DEBUG ] No samples found: slamdunk
[2022-12-09 21:05:45,155] multiqc [DEBUG ] No samples found: star
[2022-12-09 21:05:45,161] multiqc [DEBUG ] No samples found: hisat2
[2022-12-09 21:05:45,169] multiqc [DEBUG ] No samples found: tophat
[2022-12-09 21:05:45,175] multiqc [DEBUG ] No samples found: bowtie2
[2022-12-09 21:05:45,181] multiqc [DEBUG ] No samples found: bowtie1
[2022-12-09 21:05:45,189] multiqc [DEBUG ] No samples found: snpsplit
[2022-12-09 21:05:45,195] multiqc [DEBUG ] No samples found: kat
[2022-12-09 21:05:45,201] multiqc [DEBUG ] No samples found: leehom
[2022-12-09 21:05:45,208] multiqc [DEBUG ] No samples found: adapterRemoval
[2022-12-09 21:05:45,214] multiqc [DEBUG ] No samples found: clipandmerge
[2022-12-09 21:05:45,221] multiqc [DEBUG ] No samples found: cutadapt
[2022-12-09 21:05:45,227] multiqc [DEBUG ] No samples found: flexbar
[2022-12-09 21:05:45,236] multiqc [DEBUG ] No samples found: kaiju
[2022-12-09 21:05:45,243] multiqc [DEBUG ] No samples found: kraken
[2022-12-09 21:05:45,250] multiqc [DEBUG ] No samples found: malt
[2022-12-09 21:05:45,256] multiqc [DEBUG ] No samples found: trimmomatic
[2022-12-09 21:05:45,262] multiqc [DEBUG ] No samples found: sickle
[2022-12-09 21:05:45,269] multiqc [DEBUG ] No samples found: skewer
[2022-12-09 21:05:45,275] multiqc [DEBUG ] No samples found: sortmerna
[2022-12-09 21:05:45,281] multiqc [DEBUG ] No samples found: biobloomtools
[2022-12-09 21:05:45,287] multiqc [DEBUG ] No samples found: fastq_screen
[2022-12-09 21:05:45,292] multiqc [DEBUG ] No samples found: afterqc
[2022-12-09 21:05:45,299] multiqc [DEBUG ] No samples found: fastp
[2022-12-09 21:05:46,864] multiqc.modules.fastqc.fastqc [INFO ] Found 23 reports
[2022-12-09 21:05:47,361] multiqc [DEBUG ] No samples found: pycoqc
[2022-12-09 21:05:47,366] multiqc [DEBUG ] No samples found: minionqc
[2022-12-09 21:05:47,370] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2022-12-09 21:05:47,375] multiqc [DEBUG ] No samples found: clusterflow
[2022-12-09 21:05:47,381] multiqc [DEBUG ] No samples found: bcl2fastq
[2022-12-09 21:05:47,386] multiqc [DEBUG ] No samples found: interop
[2022-12-09 21:05:47,391] multiqc [DEBUG ] No samples found: ivar
[2022-12-09 21:05:47,395] multiqc [DEBUG ] No samples found: flash
[2022-12-09 21:05:47,400] multiqc [DEBUG ] No samples found: seqyclean
[2022-12-09 21:05:47,400] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'.
[2022-12-09 21:05:47,400] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2022-12-09 21:05:47,400] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2022-12-09 21:05:47,400] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2022-12-09 21:05:47,427] multiqc [INFO ] Compressing plot data
[2022-12-09 21:05:47,817] multiqc [INFO ] Report : multiqc_report.html
[2022-12-09 21:05:47,817] multiqc [INFO ] Data : multiqc_data
[2022-12-09 21:05:47,817] multiqc [DEBUG ] Moving data file from '/state/partition1/job-27962755/tmpy6pxh2lv/multiqc_data' to '/scratch/gencore/logs/html/H7HTGBGXN/merged/multiqc_data'
[2022-12-09 21:05:47,956] multiqc [INFO ] MultiQC complete