[2023-12-11 14:16:14,247] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-12-11 14:16:14,247] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-12-11 14:16:14,247] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-12-11 14:16:14,249] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-12-11 14:16:14,250] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-12-11 14:16:14,250] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H7GWJBGXV/merged [2023-12-11 14:16:15,212] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-12-11 14:16:15,212] multiqc [INFO ] This is MultiQC v1.9 [2023-12-11 14:16:15,213] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H7GWJBGXV/merged [2023-12-11 14:16:15,213] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H7GWJBGXV/merged [2023-12-11 14:16:15,213] multiqc [INFO ] Template : default [2023-12-11 14:16:15,213] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-12-11 14:16:15,213] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H7GWJBGXV/merged [2023-12-11 14:16:15,213] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-12-11 14:16:15,213] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-40767120/tmp_s7w6wd7 [2023-12-11 14:16:15,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_C8a_fastqc.html [2023-12-11 14:16:15,354] multiqc [DEBUG ] File ignored by longranger/invocation because 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hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_G5a_fastqc.html [2023-12-11 14:16:39,334] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_G5a_fastqc.html [2023-12-11 14:16:39,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_B4a_fastqc.html [2023-12-11 14:16:39,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_B4a_fastqc.html [2023-12-11 14:16:39,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_F10a_fastqc.html [2023-12-11 14:16:39,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_F10a_fastqc.html [2023-12-11 14:16:39,564] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R2_C4a_fastqc.html [2023-12-11 14:16:39,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R2_C4a_fastqc.html [2023-12-11 14:16:39,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R2_G3a_fastqc.html [2023-12-11 14:16:39,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R2_G3a_fastqc.html [2023-12-11 14:16:39,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_B3a_fastqc.html [2023-12-11 14:16:39,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_B3a_fastqc.html [2023-12-11 14:16:39,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_A3a_fastqc.html [2023-12-11 14:16:39,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_A3a_fastqc.html [2023-12-11 14:16:40,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_F3a_fastqc.html [2023-12-11 14:16:40,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_F3a_fastqc.html [2023-12-11 14:16:40,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_C6a_fastqc.html [2023-12-11 14:16:40,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_C6a_fastqc.html [2023-12-11 14:16:40,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_D4a_fastqc.html [2023-12-11 14:16:40,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_D4a_fastqc.html [2023-12-11 14:16:40,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_F4a_fastqc.html [2023-12-11 14:16:40,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_F4a_fastqc.html [2023-12-11 14:16:40,457] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R2_B1a_fastqc.html [2023-12-11 14:16:40,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R2_B1a_fastqc.html [2023-12-11 14:16:40,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_E5a_fastqc.html [2023-12-11 14:16:40,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_E5a_fastqc.html [2023-12-11 14:16:40,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_C8a_fastqc.html [2023-12-11 14:16:40,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_C8a_fastqc.html [2023-12-11 14:16:40,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_F2a_fastqc.html [2023-12-11 14:16:40,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R2_F2a_fastqc.html [2023-12-11 14:16:40,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_F6a_fastqc.html [2023-12-11 14:16:40,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_F6a_fastqc.html [2023-12-11 14:16:40,913] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_F7a_fastqc.html [2023-12-11 14:16:40,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_F7a_fastqc.html [2023-12-11 14:16:40,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H6a_fastqc.html [2023-12-11 14:16:40,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H6a_fastqc.html [2023-12-11 14:16:41,660] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-12-11 14:16:41,663] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-12-11 14:16:41,703] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-12-11 14:16:41,705] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-12-11 14:16:41,851] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 329 samples (table) [2023-12-11 14:16:41,867] multiqc [DEBUG ] No samples found: conpair [2023-12-11 14:16:41,872] multiqc [DEBUG ] No samples found: peddy [2023-12-11 14:16:41,898] multiqc [DEBUG ] No samples found: somalier [2023-12-11 14:16:41,924] multiqc [DEBUG ] No samples found: methylQA [2023-12-11 14:16:41,937] multiqc [DEBUG ] No samples found: mosdepth [2023-12-11 14:16:41,942] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-12-11 14:16:41,946] multiqc [DEBUG ] No samples found: qualimap [2023-12-11 14:16:41,951] multiqc [DEBUG ] No samples found: preseq [2023-12-11 14:16:41,955] multiqc [DEBUG ] No samples found: quast [2023-12-11 14:16:41,959] multiqc [DEBUG ] No samples found: qorts [2023-12-11 14:16:41,968] multiqc [DEBUG ] No samples found: rna_seqc [2023-12-11 14:16:41,972] multiqc [DEBUG ] No samples found: rockhopper [2023-12-11 14:16:41,976] multiqc [DEBUG ] No samples found: rsem [2023-12-11 14:16:41,988] multiqc [DEBUG ] No samples found: rseqc [2023-12-11 14:16:41,992] multiqc [DEBUG ] No samples found: busco [2023-12-11 14:16:41,996] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-12-11 14:16:42,000] multiqc [DEBUG ] No samples found: disambiguate [2023-12-11 14:16:42,004] multiqc [DEBUG ] No samples found: supernova [2023-12-11 14:16:42,014] multiqc [DEBUG ] No samples found: deeptools [2023-12-11 14:16:42,019] multiqc [DEBUG ] No samples found: sargasso [2023-12-11 14:16:42,023] multiqc [DEBUG ] No samples found: verifybamid [2023-12-11 14:16:42,027] multiqc [DEBUG ] No samples found: mirtrace [2023-12-11 14:16:42,050] multiqc [DEBUG ] No samples found: happy [2023-12-11 14:16:42,072] multiqc [DEBUG ] No samples found: mirtop [2023-12-11 14:16:42,120] multiqc [DEBUG ] No samples found: homer [2023-12-11 14:16:42,135] multiqc [DEBUG ] No samples found: macs2 [2023-12-11 14:16:42,140] multiqc [DEBUG ] No samples found: theta2 [2023-12-11 14:16:42,144] multiqc [DEBUG ] No samples found: snpeff [2023-12-11 14:16:42,150] multiqc [DEBUG ] No samples found: gatk [2023-12-11 14:16:42,154] multiqc [DEBUG ] No samples found: htseq [2023-12-11 14:16:42,159] multiqc [DEBUG ] No samples found: bcftools [2023-12-11 14:16:42,163] multiqc [DEBUG ] No samples found: featureCounts [2023-12-11 14:16:42,168] multiqc [DEBUG ] No samples found: fgbio [2023-12-11 14:16:42,180] multiqc [DEBUG ] No samples found: dragen [2023-12-11 14:16:42,184] multiqc [DEBUG ] No samples found: dedup [2023-12-11 14:16:42,189] multiqc [DEBUG ] No samples found: damageprofiler [2023-12-11 14:16:42,238] multiqc [DEBUG ] No samples found: biobambam2 [2023-12-11 14:16:42,260] multiqc [DEBUG ] No samples found: mtnucratio [2023-12-11 14:16:42,262] multiqc [DEBUG ] No samples found: picard [2023-12-11 14:16:42,304] multiqc [DEBUG ] No samples found: prokka [2023-12-11 14:16:42,317] multiqc [DEBUG ] No samples found: samblaster [2023-12-11 14:16:42,324] multiqc [DEBUG ] No samples found: samtools [2023-12-11 14:16:42,328] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-12-11 14:16:42,332] multiqc [DEBUG ] No samples found: bamtools [2023-12-11 14:16:42,336] multiqc [DEBUG ] No samples found: jellyfish [2023-12-11 14:16:42,345] multiqc [DEBUG ] No samples found: vcftools [2023-12-11 14:16:42,350] multiqc [DEBUG ] No samples found: longranger [2023-12-11 14:16:42,354] multiqc [DEBUG ] No samples found: stacks [2023-12-11 14:16:42,358] multiqc [DEBUG ] No samples found: varscan2 [2023-12-11 14:16:42,380] multiqc [DEBUG ] No samples found: bbmap [2023-12-11 14:16:42,384] multiqc [DEBUG ] No samples found: bismark [2023-12-11 14:16:42,389] multiqc [DEBUG ] No samples found: biscuit [2023-12-11 14:16:42,393] multiqc [DEBUG ] No samples found: hicexplorer [2023-12-11 14:16:42,397] multiqc [DEBUG ] No samples found: hicup [2023-12-11 14:16:42,401] multiqc [DEBUG ] No samples found: hicpro [2023-12-11 14:16:42,405] multiqc [DEBUG ] No samples found: salmon [2023-12-11 14:16:42,409] multiqc [DEBUG ] No samples found: kallisto [2023-12-11 14:16:42,413] multiqc [DEBUG ] No samples found: slamdunk [2023-12-11 14:16:42,418] multiqc [DEBUG ] No samples found: star [2023-12-11 14:16:42,422] multiqc [DEBUG ] No samples found: hisat2 [2023-12-11 14:16:42,427] multiqc [DEBUG ] No samples found: tophat [2023-12-11 14:16:42,431] multiqc [DEBUG ] No samples found: bowtie2 [2023-12-11 14:16:42,435] multiqc [DEBUG ] No samples found: bowtie1 [2023-12-11 14:16:42,440] multiqc [DEBUG ] No samples found: snpsplit [2023-12-11 14:16:42,444] multiqc [DEBUG ] No samples found: kat [2023-12-11 14:16:42,448] multiqc [DEBUG ] No samples found: leehom [2023-12-11 14:16:42,454] multiqc [DEBUG ] No samples found: adapterRemoval [2023-12-11 14:16:42,458] multiqc [DEBUG ] No samples found: clipandmerge [2023-12-11 14:16:42,462] multiqc [DEBUG ] No samples found: cutadapt [2023-12-11 14:16:42,466] multiqc [DEBUG ] No samples found: flexbar [2023-12-11 14:16:42,471] multiqc [DEBUG ] No samples found: kaiju [2023-12-11 14:16:42,476] multiqc [DEBUG ] No samples found: kraken [2023-12-11 14:16:42,480] multiqc [DEBUG ] No samples found: malt [2023-12-11 14:16:42,484] multiqc [DEBUG ] No samples found: trimmomatic [2023-12-11 14:16:42,489] multiqc [DEBUG ] No samples found: sickle [2023-12-11 14:16:42,494] multiqc [DEBUG ] No samples found: skewer [2023-12-11 14:16:42,498] multiqc [DEBUG ] No samples found: sortmerna [2023-12-11 14:16:42,502] multiqc [DEBUG ] No samples found: biobloomtools [2023-12-11 14:16:42,507] multiqc [DEBUG ] No samples found: fastq_screen [2023-12-11 14:16:42,511] multiqc [DEBUG ] No samples found: afterqc [2023-12-11 14:16:42,516] multiqc [DEBUG ] No samples found: fastp [2023-12-11 14:17:04,745] multiqc.modules.fastqc.fastqc [INFO ] Found 330 reports [2023-12-11 14:17:04,753] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_B8a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_B1a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_C9a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H1a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_F1a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_B4a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_B1a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H6a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_C10a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_C5a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_C9a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H8a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_G5a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_C2a' [2023-12-11 14:17:04,754] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H6a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H7a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H3a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_G7a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H4a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H1a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_C4a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_D9a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_D3a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_D9a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_A1a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_B8a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_C2a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_G5a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_G1a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H8a' [2023-12-11 14:17:04,755] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_G6a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_D1a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_C4a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_E1a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_B4a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_A1a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H9a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_B10a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_C10a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_B5a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_F1a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H9a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_G7a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_B7a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_B7a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_C5a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_D1a' [2023-12-11 14:17:04,756] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H4a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H10a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_E1a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H3a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_B10a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_B5a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H10a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_C1a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_G6a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H2a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_D3a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_H2a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_G1a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_H7a' [2023-12-11 14:17:04,757] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: 'H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_C1a' [2023-12-11 14:17:33,885] multiqc [DEBUG ] No samples found: pycoqc [2023-12-11 14:17:33,922] multiqc [DEBUG ] No samples found: minionqc [2023-12-11 14:17:33,967] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-12-11 14:17:34,010] multiqc [DEBUG ] No samples found: clusterflow [2023-12-11 14:17:34,045] multiqc [DEBUG ] No samples found: bcl2fastq [2023-12-11 14:17:34,087] multiqc [DEBUG ] No samples found: interop [2023-12-11 14:17:34,120] multiqc [DEBUG ] No samples found: ivar [2023-12-11 14:17:34,165] multiqc [DEBUG ] No samples found: flash [2023-12-11 14:17:34,212] multiqc [DEBUG ] No samples found: seqyclean [2023-12-11 14:17:34,212] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-12-11 14:17:34,212] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-12-11 14:17:34,212] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-12-11 14:17:34,213] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-12-11 14:17:34,586] multiqc [INFO ] Compressing plot data [2023-12-11 14:17:34,712] multiqc [INFO ] Report : multiqc_report.html [2023-12-11 14:17:34,712] multiqc [INFO ] Data : multiqc_data [2023-12-11 14:17:34,712] multiqc [DEBUG ] Moving data file from '/state/partition1/job-40767120/tmp_s7w6wd7/multiqc_data' to '/scratch/gencore/logs/html/H7GWJBGXV/merged/multiqc_data' [2023-12-11 14:17:34,906] multiqc [INFO ] MultiQC complete