FastQCFastQC Report
Mon 11 Dec 2023
H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_F4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_F4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTTGATGCCAGGGTCCTGGGATCAAGCCCTGCATCCGGCCTGTGTGT12.941176470588235No Hit
TCCCCCTACTAGTGCTGACCAACATAGTCTCTATCAGAATGCCTGTCTCT12.941176470588235No Hit
CCTTATTTCCTCAAATTTCTGTCCCAATTGCTCTCGCCACTTTTCATTTC12.941176470588235No Hit
GGTGTCACTAAGCTATTCAACAGGTGCACTGGCCAGTTGCATGGGCCTCC12.941176470588235No Hit
GTCCTGCCTGGAGCCTGCTGTTTTCCCTGACCGCAGACCCGTTTCTTTCA12.941176470588235No Hit
GGAGAGAGCAGCAGGCAGCAGGATAAGTAGGCTTCCCACTGAGCGGGGAG12.941176470588235No Hit
GAGAAGCACTCAGGGAGGGTCGGAGCAGTACAGGTGTCATATCAGATTGC12.941176470588235No Hit
GATAATCACTCAATGAGTGACTTCGAAGCCATGTCGTCTGAAGGCACCAA12.941176470588235No Hit
CTCTGGGGTAGACCCAAGTTCGCTTTTAAAGATAATTTAAGGAAAAGGCT12.941176470588235No Hit
ATCTAGATATTAATCATTATTTCTTCCATTTGGTCCTCAGTTTGTCGTCT12.941176470588235No Hit
CTTTGGAGCCAGGTGAAGCAGGAGAAGGAGGGGATGGAGGGTCTCTGGGA12.941176470588235No Hit
GTTGATTACCTGTTAGAGCCTCTCACGTATGAGGGACCAAAAGAGTTAAA12.941176470588235No Hit
CCTTACTCAGTGCTGAGCCTGCATCTCCCTCTCGGTGCTGTCTCTTAATC12.941176470588235No Hit
TGATACTGGACAGCAAGCAAACCTGCCTTTGTGATCTGGAGAGAGACATG12.941176470588235No Hit
TTCCACAAGAGGGGTCCAGATTGCTTCAAATGAGAATGTGGAAACCATGG12.941176470588235No Hit
GTTCTGGTGGGGCAGCAGCAAAGGGGAGAAGTCTGTCTCTTATACACATT12.941176470588235No Hit
GAATCCAGGAATGTGTAGTTGCAACGGCATCATATTCCATGCTTTTGGCT12.941176470588235No Hit
GTACAGGGAGGCACTAGTACCTGTATTCCACCCAGCAAGATGATTTTTGC12.941176470588235No Hit
CTATTGGAAAATGAAAGAACTTTGGACTACCACGATTCAAATGTGAAGAA12.941176470588235No Hit
TCGCAGTGCTGCGGAATCTCGCTTTTGAAAGAGCAAGCGTTATGGCAGCA12.941176470588235No Hit
GTGCTAGCCAGCACCATTCTGTTTTCATGCCTGATTAGTGGATTGGTGGT12.941176470588235No Hit
GATGATCGGGGATGATAAAATCACACCCCTTAAGACCTAGGGAGCCAGGC12.941176470588235No Hit
CTCTTCCAGGACATAATTATTATGATGTCAAAAATGCAGTTGGGGTAATC12.941176470588235No Hit
GAGCTGCTTCTGGGGGTTAGAATATTCCAGGATAGCTTAAAGCTTCTAAA12.941176470588235No Hit
CTCTAGCTCTATGTTGACAAAATGACCATCGTCAACATCCACAGCACTCT12.941176470588235No Hit
CGTGCATGGAAAGTGTCAAAAATGGGACTTATGACTACCCAAAATACTCA12.941176470588235No Hit
AGTCCCAATAGTTCTCATTGCATGTACCATCTGCCTAGTCTGATTAGCAA12.941176470588235No Hit
GTCCATCTGTCCGGTCAGCCCCGCCCATCCTTCCCAAGGCTGTCTCTTAT12.941176470588235No Hit
GATATATCTGTCTACGTAACATTTGGGGGGGGTTCTCTGCATGTATTTTG12.941176470588235No Hit
TTAGTGGATTGGTGGTAGTAGCCATCTGTCTGTGAGACCGATGCTGTGAA12.941176470588235No Hit
CCCCTGGGGCTGGGGCTGAGTACAGTTCTGCTGGCCCTGCTCTACAGCAC12.941176470588235No Hit
CTTTTCCATGATCGCCTGGTCCAATCGCACGCAAAGAGGGCCTATTATCT12.941176470588235No Hit
GTACAGCCCACTCCTAAGTAGTCACCCTAGTTGGTTCTGTAGTAGGTAGC12.941176470588235No Hit
GATCTGGCCTGCGGATGCCTTTTGTTGATTGGTATTTCCTCCACTCCTGG12.941176470588235No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)