FastQCFastQC Report
Mon 11 Dec 2023
H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_E4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_E4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTGGAAGAGAAGGTAATGGTGAAATTTCTCCAACTATTGCTCCCTCC16.25No Hit
GTTCCATAGCCTTTGCCGTAGTGCTAGCCAGCACCATTCTGTTTCTGTCT16.25No Hit
TTGTTGTACAGCAGGACTCTAGAATTTTCCATCTTGACTGACTGAAACTC16.25No Hit
ATCTTGTCACCTCTGACTAAGGGAATTTTAGGATTTGTGTTCACGCTCAC16.25No Hit
GAATCGTTCTATTCTCAACACAAGCCAAAGGGGAATTCTTGAGGATGAAC16.25No Hit
CTCCTGGTGGGCTCTGGATTTAGCGTTGTGGTGGGGCGCCGCACAAACAA16.25No Hit
ATTCTCTATTCTTTTTTCCAGGTGGTTGAACTCTTTACCTACTGCTGTGA16.25No Hit
ATGCTGTGGAGCCTTGAAATATCTAGTCTTATCACCTACCAGTGTTCCCC16.25No Hit
CTTATTTTCAGTGTTTGGAGGTTGCCCGTTAGCACTTCTTCTTCTTTCTT16.25No Hit
TAGTATTTACTCAGTAAAAGTTTGATATTTCAACTTTGTAATTAACTTAG16.25No Hit
GGAAGGAGCAAAGTAGTAGTTGGAAAATCCGGGAAGGGTGGTATTGTAGC16.25No Hit
TGTTCGCACCGGAATGGATCCCAGAAAGTGCTCTCTAATGCAAGGTTCAA16.25No Hit
ATATTATGGTATTATTAACTTTATGCACATTGTTGTACAGCAGGACTCTA16.25No Hit
GTATATATATAGCACAGGCCTATGTCAAGAAGCAAGAAAAATCTCAAATA16.25No Hit
GGCTAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGAATTTTAGGA16.25No Hit
GAACAAGAGATAAGAGCTTTCTCGTTTCAGCTTATTTAATGATAAAAAAC16.25No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)