FastQCFastQC Report
Mon 11 Dec 2023
H7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_A6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7GWJBGXV_n02_CIVIR_Ferret_Flu_R1_A6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAATAAATAGCTAATGGGAGTAAAGCCTTTGAAGATGAAATGGATGTAT12.941176470588235No Hit
GTTGAAAAGTTTGATCTGATTTATATTCTTAAATTGTATTATGTGGTTTA12.941176470588235No Hit
ACAACCTCCAGAGAACAAATGAAAACAGGCGATATAAATATTGACACAAA12.941176470588235No Hit
CTCAAACACAATCTCACTAAATTAACACAGACACGAACCGTTCAATTATA12.941176470588235No Hit
GCTGAAATACTAATACATTAAGAATAATTAATGAAAATTGATAGAACAAT12.941176470588235No Hit
GCATAAAGCTTGGTGTATAAATACCTGGTAGATTAAAGGTGCCTGTTTTT12.941176470588235No Hit
TTCCTAAATTATTTTTGATATAAATGTACATTATTAATTTATATTAAACA12.941176470588235No Hit
GTTGTGGAGACGCAAATAGACTGTTGAATACAGATAAAACATCCAAATGT12.941176470588235No Hit
TTAAATAAGCTGAAACGAGAAAGATCTTATCTATTGTTCTACTTCAAGCA12.941176470588235No Hit
GCCTGTCACCTAGTCCGATGATTATGATCACCATCCAGTGACTCCTCTGC12.941176470588235No Hit
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG12.941176470588235No Hit
TCTCATAACCGTTTCTTGAACTAAAGCTTTTAGTTCTCCCTATCCAAACA12.941176470588235No Hit
CCACAACTTTAGGGGTTTTCGTCTGAATCTAGAAAATTGCTTCTCATTGT12.941176470588235No Hit
CTACTGGCCAAACCATGGACTTCCAACTTCTTCTCTTTCCTTGATGTCAG12.941176470588235No Hit
GTAATCCAAAATATCAGTTTCAATATCCAAATGACTGTATCTTATACAAA12.941176470588235No Hit
TAATCAAAGAGGACACATAATTAAGTAAATATAAGCACCCAGCACTCAGA12.941176470588235No Hit
GTCATAAGTCCCAGAATTTACACTTTACAAGAACCTGTTATGTCTCTTAT12.941176470588235No Hit
ATTGAAGAAATGCCGAACTGATTGAAAGCGACAGATAATAGTGTCTAAAA12.941176470588235No Hit
GGAGGGAGCAATAGTTGGAGAAATTTCACCATTACATTCTCTTCCAGCAA12.941176470588235No Hit
AAGCTGGACCCAGAGTGGCCAGGCTGTGGAATTCTGTTGCAGTTTGCAAG12.941176470588235No Hit
ATCTGTATGTTGACACTTAAGTTTCTGATGATCATTCGAGATATTGAGTA12.941176470588235No Hit
CCCTGGCATCAATCCGCCCCATAGACAAAATGGCCTCCACCATGCTAGAA12.941176470588235No Hit
ACCATTAGCTAGTTATTCATCATATAACTAAAATGGGTTAGTCGTCATTT12.941176470588235No Hit
CTCCAACACCATCTAAAGCTTTCACCTAGACTGTTTCCAATGGAATATCC12.941176470588235No Hit
CTATTTTCGTTAGATATTAACAGGAGAGAATATAAAATAACATAGTACTG12.941176470588235No Hit
CCCTAGAGCTACCTGAAAATAAAAAGATGAAATAAAATAAAACATAAAAA12.941176470588235No Hit
ATATTAACTGCTAGGGAAAAAGTTATCGAAGAGAGTGCAGCACTTCTGGT12.941176470588235No Hit
ATTTATTTTAGAGTCAGAGAGAGAGAGATAAACACACTCCACACTCAGCA12.941176470588235No Hit
TCACTCGACAAAAGATCAGATCAAACGATCTATTTGCCTACAATTAACAT12.941176470588235No Hit
AATAATGACGGTCAAGGATGAGGCATCAATACTTGTAGAAATTTAAACAT12.941176470588235No Hit
ACTTATTACACAATTAATAATAAATTTAATAAGACTAAAATAATATTTAG12.941176470588235No Hit
TCTGCAAGTATTTAATTGACTCACTGACCAAATATGAACAAGCTATCACA12.941176470588235No Hit
CAGTTTATGCCGTGTCTAAATAAGATTTTGTGGTTTATATTTCTTGTATT12.941176470588235No Hit
CTGTCACGTTCTGTGTTGTAAAGAAGTCAGGGAGGGGTAAAAGCTGTCTC12.941176470588235No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)