FastQCFastQC Report
Mon 11 Dec 2023
H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_F5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_F5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTTGAACAACTTCCATTGTTTCAAGGCATGAATTCTCAAATATTCCTG14.0No Hit
GTTGTATATGAGGCCCATGCAACTGGCAAGTGCAACAGTTGATTAGCTTA14.0No Hit
GGCAAGGGGACGTAGTGTTGGTAATGAAACGAAAACGGGACTCTAGCATA14.0No Hit
TTTCTGCTCTGTAGGTAGTGAAGGTCTCCGTTTCTCATCAAATTTTCTCG14.0No Hit
GCTACTGGGAGAAACCTTGTTTTACGGACCAATTCTCTTTCTAGCATGTA14.0No Hit
CTCATATACAACAGGATGGGAACAGTGACCACAGAAGCTGCTTTTGGTCT14.0No Hit
CAATATCAGTTGCAAGATCCCAATGATATTTGCTGCAATGACGAGAGGAT14.0No Hit
CGTCCATTTTCACCCCTCCAGAAATTTCGGTCATTGATTCCACGTTTGAT14.0No Hit
CTAAGTCCCCTTGCCCAATTAGCACATTAGCCTTCTCTCCTTTTGCAAGA14.0No Hit
CAAAAACATAATGGACTCCAACACCATGTCAAGCTTTCAGGTAGACTGAT14.0No Hit
ACCCAATCCATTGTCTGCAAATCGCTCGCGGATATGCCAAAGGAAACAGT14.0No Hit
CTCCAACTATTGCTCCCTCCTCAGTGAAAGCCCTTAGTAGTATCAAGGTC14.0No Hit
CATTTGGATGTAGAATCTCCCGATTCCACCAATCATTCTTCCGACAGATG14.0No Hit
CTTTCAGTACTATGTTCTTTTCCATGATCGCCTGGTCCAATCGCACGCAA14.0No Hit
GGGGTTCGCTTCTGGTAGGCCTGCAAATTTTCAAGAAGGTCATCTTTCAG14.0No Hit
GGATGGATTGGGTGAGGCCCCATTCCTTGATCGGCTCCGCAGAGATCAAA14.0No Hit
GTATGGCACCTATATGTGTATCTGTAGGCGTTGATGCACAATGGAAGAGC14.0No Hit
ATCTGGAATATCAGATAGGATACATATGCAGTGGGATTTTCGGAGACAAT14.0No Hit
GTTGTATATGAGGCCCATGCAACTGGCAAGTGCCCCAGTTGAATAGCTTA14.0No Hit
GGGTTGGACCAGGCGATCATGGAAAAGAACATAGTACTGAAAGCGCACTT14.0No Hit
AAACAGAATGGTGCTGGCTAGCACTACGGCAAAGTCTATGGAACAGATGG14.0No Hit
GGCTTGCAGTAGCAAGTGGGCATGACTTTGAAAGGGAAGGGTCTGTCTCT14.0No Hit
GTCTTAGTGAGTATCTCGCGAGTGCGGGACTGCGACATTAGATCTGTCTC14.0No Hit
TAGTGACACCTCCTTGGCCCCATGGAACGTTATTTATCTTTTGAGCTTCT14.0No Hit
GAGCAAATGGAGTAAAAGGGTTTTCATTCAAATACGGCAATGGTGTTTGG14.0No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)