FastQCFastQC Report
Mon 11 Dec 2023
H7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_A9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7GWJBGXV_n01_CIVIR_Ferret_Flu_R1_A9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGAACAGATTGCTGATTCAAAGCATCGTTCTCACAGACATGTCTCTTA12.380952380952381No Hit
CCAGGAGAGAGGAACAGAGGGAAAGGGAGAAGGAGCCGCCACAGTGAGCA12.380952380952381No Hit
GGAGTAAATGAATCAGCTGACATGAGTATTGGAGTAACAGTGATAAAGAA12.380952380952381No Hit
ACACTATGCCAGGACAATTTGGACCAGAATCTACCGAAGGAGAGGACGAT12.380952380952381No Hit
GTTCTTCACATTTGAATCGTGGTAGTCCAAAGTTCTTTCATTTTCCAATA12.380952380952381No Hit
GAGCAAAAGCAGGTCAAATATATTCAATATGTAGAGAATAAAAGAACTGA12.380952380952381No Hit
GCAGGTCTTACTCATAACATGATTTCGCATTCCAACCTGAATGCTGAAAA12.380952380952381No Hit
TTCTGATAGAGACTTTGTTGCTCAGCACTAGTTGATGGATGGTGAATGCC12.380952380952381No Hit
TCTAAAAATAGAAATAAATTTACATGGGTAAAAGTAGGTGTCACTAATAT12.380952380952381No Hit
GCCTTCCCTCTGACGTTCCCAGAGTAGCGCCGTGATACAAAATAACAGTA12.380952380952381No Hit
CAATATATTGAGAACACAAGAGTCAGAATGTGAATGTGTAAATTGTTCTT12.380952380952381No Hit
GCGCTGACCACCGCGCTTGCCGACGCCGCCTTAACCGCCTCCCTTGCCTG12.380952380952381No Hit
TCCTGTTGTATATGAGGCCCATGCAACTGGCAAGTGCACCAGTTGAATAG12.380952380952381No Hit
TTCCAATAGTTAGCCAATTGATGAAATCATGACAATCACTTGCTCAACAA12.380952380952381No Hit
GTCCAAAATATGTAAAAAGCACAAAATTGAGACTGGCAACAGGATTGAGG12.380952380952381No Hit
GTGCAGGAGGCAGCGGATCTGGCGGGACCTGTCTCTTATACACATCTCCG12.380952380952381No Hit
GTATGTAGAAATTAAATTATAGACTCAAGATATTTGTTATTTAATGCACA12.380952380952381No Hit
GGCAAAGGCTATTTAAAAGATTGCTGGATAGAGTGAAAAGGAAGCGTAGG12.380952380952381No Hit
AAACTATGCTATCTAAGAGGGGAAGCACCATACCAATTGTGAATATGTAA12.380952380952381No Hit
CTCGGAACACAGATCATTGAAAGCCACAGATAATCCCTGTCTCTTATACA12.380952380952381No Hit
GTCCATTACTTGGTCCATCGGTCATTACAGTAAAGCAAGAACCATTTACA12.380952380952381No Hit
CATCTGTACCTACTTCGCGCTACCTGTCTTAAATGACCCTAGAGTAAATT12.380952380952381No Hit
AATGATGACACTGAGCTCAATTGCTCTCGTAGCTCCTCATAATCGATGAA12.380952380952381No Hit
CAAATGCAAATTGCAAGTTAACCATTTTAATATATTATTGACACCTACTT12.380952380952381No Hit
CAAAAACATATGCATCTGCATTCTGATAGAGACTTTGTTGGTCAGCACTA12.380952380952381No Hit
CATTAAAATAAGTCAATGGTGTTTGTATATTGAGAACTAAAAGAATTATA12.380952380952381No Hit
GCTCTGCGGGGAGCCTGCTTCTTCTCGATCTCCCTCTGCCTGCTTGTGCC12.380952380952381No Hit
ACAGGAGAGAGGAACAGAGGGAAAGGGAGAAGGAGACTCCACAGTGAGCA12.380952380952381No Hit
CCTCAAAAGTATGTCCTGGAAGAGAAGGTAATGGTGAAATTTCTCCATCT12.380952380952381No Hit
GTCCTGGCCTAGTGGGAGGTAGCCCGTCATAGCGCGCGCTTTAAGGCTGT12.380952380952381No Hit
AGACAATGGGGCAGTGGCTGTGTTAAAGTACAACGGCATAATAACAGACA12.380952380952381No Hit
GTCAAAAATGAAGTTGGTGTACTCATCTGATTACTTTAATTGAATGGTAA12.380952380952381No Hit
CATCGGAAATATAGTTCAGCTCGCCTGCGCCGCACTTGCCCATCGCCATG12.380952380952381No Hit
GCTCTTATCTCTTGTTATACTTCAAGCAGTAGTTGTAAGGCTTGCATAAA12.380952380952381No Hit
ATTTACGGCGATGACCCCTTGGATGCACAGCTGGCAGTCATGGCGATGCG12.380952380952381No Hit
AGCTAGGCGTGCGCGGCCTGCGCGATATCGAATTAGCGGTCCAGCTCTTG12.380952380952381No Hit
AAACGTAAGTTCTTTCTATCATCCCGTCAGGCACCCTAAAAGCCGAGATC12.380952380952381No Hit
TTTCAGATGAGGAAGCCTAGACCAGACACTGGGCTCTGAGTTTTTTTCTA12.380952380952381No Hit
GTGCGCACCTTGGAATCCCACGTGGCCTACTACAAGCGGTGGGCGGAGAC12.380952380952381No Hit
GTTTGAAATTTTCCTTTGAGGATATTGCACATTCTTTCATAAGCAACCCT12.380952380952381No Hit
GCACTTAACTCAAAATCAGTGATTATGAGTGAAGACGAATCCAGAATAGA12.380952380952381No Hit
GAATAAACTAGCCATGTTCCATGAATGTCTCATTTCCTCAAGGATGTGGG12.380952380952381No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)