H7GKMBGXC_n01_MT_30830.TR1_3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H7GKMBGXC_n01_MT_30830.TR1_3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24163615
Sequences flagged as poor quality	0
Sequence length	151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	703855	2.9128712736070326	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	130493	0.5400392284018761	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	113297	0.46887437993032083	No Hit
GTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	42160	0.1744772046732246	No Hit
CGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36504	0.1510701109912569	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT	36158	0.14963820603829353	TruSeq Adapter, Index 19 (97% over 38bp)
CTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCCTCGTCATCACG	30309	0.12543239080741853	No Hit
CCGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30281	0.12531651410602263	No Hit
GGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29821	0.12341282544023319	No Hit
GCCTAACTGCTTGGACGCGGATATCCAATACCGCGCTTACCCTATCCTCC	29546	0.12227475069438079	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCTAAC	11085	45.7784	1
CGTTTTT	6090	44.63877	1
CTTTTTT	55430	40.64755	1
CGATTAG	8180	39.696396	8
ATCGATT	8640	38.844658	6
TAGTTGT	13535	38.717415	9
TTGTACT	14415	35.907223	1
TGTACTC	14620	35.748165	2
TACTCTA	16080	33.403828	4
CCTAACT	16245	33.153927	2
TCTAGTT	16785	32.343483	7
ACACGTA	2970	31.975582	145
CTCTAGT	17005	31.586802	6
ACTCTAG	17235	31.417631	5
TCGATCG	10980	29.774076	3
GTACTCT	17610	29.513714	3
GATCCAG	16925	29.08072	5
GATCCAA	10770	28.200863	5
CGATCGA	12025	28.09085	4
TAACTGC	18210	27.466494	4