FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm226R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm226R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15356457
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGGGG150000.011.90649280-81
TACCGTA15250.011.2120199
CGCGGGT27800.010.7835621
AAAAGGG178850.010.23807978-79
CGGGGTT50850.09.8257291
CCGGGAT43600.09.3859541
AGGGGGG172800.09.22226182-83
CTACCGT20250.09.1472248
AAAGGGG157500.08.56495480-81
CGGGGAT49850.08.3046351
GGGTTAA44500.08.05893666-67
CCCGGAT50900.08.0398351
CGGGATT24450.07.97942261
CGCGGAT22450.07.8424511
GTCGGAT17000.07.8374651
GTCCGAT14002.7830538E-107.8174711
CGACCTA8551.5712913E-57.7782344
CTCGGGT39750.07.66142031
CGCAATC16803.6379788E-127.6413692
CGCGAGT16955.456968E-127.5798491
Produced by FastQC (version 0.11.5)