FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm212R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm212R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14725916
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTA15050.011.6767119
CTACCGT17600.011.3342288
CGCGGGT33600.010.7630541
CCGGGAT41050.08.80971051
CGGGAAT35500.08.7125681
CTCGGAT42300.08.4368841
CGGGGAT49350.08.3886741
GCGTCGT119350.08.37737394-95
TCGGATT22000.08.2122982
AGGGGGG149150.08.0730782-83
ATCGGTC20650.08.0503846
AAAGGGG141650.07.94720380-81
GATCGGA278650.07.89223694-95
CGGGGTT49500.07.8826061
AGCGTCG140800.07.742089794-95
ATCGGAA262900.07.705602694-95
CGGGTCT57600.07.50599773
CCCGGAT51750.07.26403471
GGGGAAT84200.07.23367641
AGATCGG312150.07.1745894-95
Produced by FastQC (version 0.11.5)