FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm211R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm211R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15715424
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGT31550.012.6682571
TACCGTA14050.011.8317029
CGGGGTT49750.08.7033261
CCGGTAT19200.08.4258681
CTACCGT19800.08.3957018
AGGGGGG140600.08.24295382-83
GCGTCGT137450.07.99997794-95
CGACCGT12007.93807E-97.93022871
CGCGATT5400.00572961487.9302281
CGGGGAT54050.07.83486031
CCGGGAT45850.07.78321271
AAAGGGG145800.07.73724880-81
GGGGAAT85400.07.57736161
CTCGGTT29050.07.53439951
CGGCGAT28100.07.4504641
AGCGTCG156450.07.301666394-95
CGGGTCT61250.07.21429823
GATCGGA306250.07.188795694-95
CGGGAAC53850.07.15708641
CGCGGAT18757.2759576E-127.1054851
Produced by FastQC (version 0.11.5)