FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm210R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm210R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15920639
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTA14550.012.4041579
CGCTAAT6001.6698086E-59.51579951
CGCGGGT27150.09.1127361
AGGGGGG153050.09.07763382-83
CTACCGT19850.08.8528088
CGTATCG18500.08.7311993
AAAGGGG154000.08.57428780-81
TAGGGGG52200.08.46252550-51
ACTACCG25100.08.1364947
CGGGGAT48050.08.02061
CGGGGTT50700.07.8829111
AGCGTCG174900.07.821110794-95
CGCGAAT8551.538094E-57.79071241
CGACCTA9305.8158985E-67.66144854
CTCGTAT15554.1836756E-117.64935641
GGGGGGT161900.07.525279514-15
CTCGGTT29150.07.5081781
CGCGGAT19350.07.37658831
AAGGGGG134700.07.31685580-81
AGAGCGT214050.07.31149194-95
Produced by FastQC (version 0.11.5)