FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm209R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm209R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18015892
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTA16800.011.5912759
CGCGGGT35450.010.8708261
TAGGGGG57400.010.09567450-51
CGGGTAT19550.09.7343511
AAAGGGG177750.09.63342380-81
AGGGGGG186600.09.53302182-83
CGCGTAT4100.0054659969.2832471
GGGGGGT178250.08.5802614-15
CTACCGT24450.08.5472828
CGGGGAT54550.08.4600081
CGCGAGT18700.08.3958771
CGACCTA10801.0575604E-88.356934
GTCCGAT16000.08.32591151
GCGTCGT170650.08.21095194-95
CGGGAAT44450.08.1345891
GGGGAAT99700.07.7783271
AGCGTCG194300.07.61487894-95
CTCGGTT30800.07.56901031
CTGGAAT179550.07.4723541
CCGGGAT51400.07.4049241
Produced by FastQC (version 0.11.5)