FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm204R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm204R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14811453
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTA15800.012.0240089
CGCGGGT29550.010.3054891
CGGGTAT15200.010.0173421
CTACCGT20900.09.3171368
CGGGGAT47900.08.8409841
ATTCGCG8602.0214065E-78.8367846
GTCGATT12401.9281288E-108.4420351
CGGGGTT49900.08.1052141
CGGGAAT36400.08.104691
CCGGGAT44250.08.064811
CTCGGGT39900.07.99002271
CTCGTAT14901.6370905E-117.983621
CGAGAAT31750.07.94288441
CGCTAAT6000.00166378057.9303961
GGGGAAT77500.07.92016271
CCGCAAT20550.07.6409651
GTTCGAT15051.6189006E-107.5878871
CGGAAAT36700.07.519831
CTCGGTT27850.07.51750231
CTGGAAT147100.07.43980031
Produced by FastQC (version 0.11.5)