FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm203R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm203R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15591727
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGATT5252.667657E-711.7814541
TACCGTA15550.010.3847659
CGCGGGT33450.09.6722531
CGGGGAT50450.09.525221
CTACCGT18500.08.9854888
CGGGGTT50950.08.778061
AGGGGGG141550.08.60736582-83
AATCGGC16051.8189894E-127.99022775
CGGCGAT30800.07.87833261
AAAGGGG145250.07.86479680-81
CGACCGT14153.5106495E-107.73368021
CGCGAAA8056.137692E-57.6835571
CGGGAAT39150.07.65638261
CGGCATT28100.07.6194051
CGCGAAC9457.1270097E-67.55221371
ACTACCG26350.07.39002287
CTCGTAT16301.2187229E-107.29738471
CGGGCAT66550.07.29234031
CGAGAAT32750.07.2639621
CGGGTCT63550.07.2518793
Produced by FastQC (version 0.11.5)