FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm202R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm202R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15072142
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTA15700.013.3106759
CTACCGT20450.011.1478758
ACTACCG23000.09.4989827
CGCGGGT33150.09.1863991
GGCGAAT18850.09.0874071
CTCGGTT28150.08.2825971
TCGGATT26400.08.1040572
GCGTCGT132700.07.96413494-95
CTCGGAT45200.07.8953551
CGCTAAT5450.0062220557.85768941
CGGGGTT46900.07.81208131
AGCGTCG153200.07.797559794-95
CGCGGAT20900.07.7407221
CCGGGAT43000.07.635361
AAGGGGG126000.07.61486980-81
GGGGAAT78550.07.5720361
CGGGAAT32100.07.4116321
CTCGTAT14303.5124685E-97.32041171
AGAGCGT185550.07.30843994-95
TCGTGTA111800.07.13751394-95
Produced by FastQC (version 0.11.5)