FastQCFastQC Report
Sat 10 Aug 2019
H7G3CBGXC_n02_ALm201R.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH7G3CBGXC_n02_ALm201R.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17028345
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTA16500.011.8018879
CGCGTAT3750.002613311910.1503261
CGCGGGT32750.09.0074451
CTACCGT21700.08.9737598
CGGGGTT58350.08.96961
CGGGGAT51900.08.7091841
CCGGGAT47300.08.5502541
CCCGTAT26750.08.5376561
CTCGTAT15851.8189894E-128.1050511
CGTATCG19500.08.0401383
AGGGGGG156750.07.848312482-83
GTATCGA21950.07.5741214
GGGGAAT92450.07.46246531
AGCGTCG152000.07.40694-95
GCGTCGT131300.07.39788594-95
TAGGGGG54700.07.250723450-51
AAAGGGG160200.07.249298680-81
ATCGGAA281550.07.24580594-95
CGCGAGT16451.4915713E-107.23095041
CGGCGAT31200.07.01494841
Produced by FastQC (version 0.11.5)