FastQCFastQC Report
Wed 16 Mar 2022
H75JHBGXL_n01_newEVMar4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH75JHBGXL_n01_newEVMar4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5842365
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGA101100.1730463605064045No Hit
TGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCA81860.14011449130617482No Hit
TGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAAC70070.11993430742516087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)