FastQCFastQC Report
Wed 16 Mar 2022
H75JHBGXL_n01_new3064Mar1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH75JHBGXL_n01_new3064Mar1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4511760
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCA90340.20023228185896413No Hit
CAACCATAAACGATGCCGACCAGGGATCAGCGGGTGTTACTAATAGGACC58260.12912920900047875No Hit
TAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCCTG50280.11144209798393531No Hit
TTCCCATATAGGTCAACCTTTTGAACTGCCTGCTGAATCCATGAGCAGGC45960.10186712059152084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)