[2022-03-07 23:46:13,285] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2022-03-07 23:46:13,285] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2022-03-07 23:46:13,285] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2022-03-07 23:46:13,286] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2022-03-07 23:46:13,286] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2022-03-07 23:46:13,286] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H722TBGXL/merged
[2022-03-07 23:46:14,128] multiqc [WARNING] MultiQC Version v1.12 now available!
[2022-03-07 23:46:14,128] multiqc [INFO ] This is MultiQC v1.9
[2022-03-07 23:46:14,128] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H722TBGXL/merged
[2022-03-07 23:46:14,128] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H722TBGXL/merged
[2022-03-07 23:46:14,128] multiqc [INFO ] Template : default
[2022-03-07 23:46:14,128] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2022-03-07 23:46:14,129] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H722TBGXL/merged
[2022-03-07 23:46:14,129] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2022-03-07 23:46:14,129] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-15748921/tmpgdinrq4a
[2022-03-07 23:46:14,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-03-07 23:46:14,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2022-03-07 23:46:14,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM304_fastqc.html
[2022-03-07 23:46:14,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM304_fastqc.html
[2022-03-07 23:46:14,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM330_fastqc.html
[2022-03-07 23:46:14,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM330_fastqc.html
[2022-03-07 23:46:14,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM323_fastqc.html
[2022-03-07 23:46:14,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM323_fastqc.html
[2022-03-07 23:46:14,478] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM314_fastqc.html
[2022-03-07 23:46:14,479] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM314_fastqc.html
[2022-03-07 23:46:14,517] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM315_fastqc.html
[2022-03-07 23:46:14,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM315_fastqc.html
[2022-03-07 23:46:14,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM308_fastqc.html
[2022-03-07 23:46:14,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM308_fastqc.html
[2022-03-07 23:46:14,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM320_fastqc.html
[2022-03-07 23:46:14,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM320_fastqc.html
[2022-03-07 23:46:14,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM328_fastqc.html
[2022-03-07 23:46:14,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM328_fastqc.html
[2022-03-07 23:46:14,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM310_fastqc.html
[2022-03-07 23:46:14,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM310_fastqc.html
[2022-03-07 23:46:14,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM318_fastqc.html
[2022-03-07 23:46:14,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM318_fastqc.html
[2022-03-07 23:46:14,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM327_fastqc.html
[2022-03-07 23:46:14,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM327_fastqc.html
[2022-03-07 23:46:14,804] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM329_fastqc.html
[2022-03-07 23:46:14,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM329_fastqc.html
[2022-03-07 23:46:14,846] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM326_fastqc.html
[2022-03-07 23:46:14,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM326_fastqc.html
[2022-03-07 23:46:14,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM322_fastqc.html
[2022-03-07 23:46:14,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM322_fastqc.html
[2022-03-07 23:46:14,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM303_fastqc.html
[2022-03-07 23:46:14,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM303_fastqc.html
[2022-03-07 23:46:14,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM311_fastqc.html
[2022-03-07 23:46:14,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM311_fastqc.html
[2022-03-07 23:46:15,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM312_fastqc.html
[2022-03-07 23:46:15,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM312_fastqc.html
[2022-03-07 23:46:15,051] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM331_fastqc.html
[2022-03-07 23:46:15,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM331_fastqc.html
[2022-03-07 23:46:15,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_undetermined_fastqc.html
[2022-03-07 23:46:15,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_undetermined_fastqc.html
[2022-03-07 23:46:15,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM319_fastqc.html
[2022-03-07 23:46:15,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM319_fastqc.html
[2022-03-07 23:46:15,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM324_fastqc.html
[2022-03-07 23:46:15,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM324_fastqc.html
[2022-03-07 23:46:15,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM316_fastqc.html
[2022-03-07 23:46:15,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM316_fastqc.html
[2022-03-07 23:46:15,257] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM325_fastqc.html
[2022-03-07 23:46:15,258] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM325_fastqc.html
[2022-03-07 23:46:15,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM321_fastqc.html
[2022-03-07 23:46:15,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM321_fastqc.html
[2022-03-07 23:46:15,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM309_fastqc.html
[2022-03-07 23:46:15,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H722TBGXL_n01_AKM309_fastqc.html
[2022-03-07 23:46:15,872] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2022-03-07 23:46:15,873] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2022-03-07 23:46:15,890] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 25 samples (table)
[2022-03-07 23:46:15,892] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2022-03-07 23:46:15,902] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2022-03-07 23:46:15,906] multiqc [DEBUG ] No samples found: conpair
[2022-03-07 23:46:15,910] multiqc [DEBUG ] No samples found: peddy
[2022-03-07 23:46:15,914] multiqc [DEBUG ] No samples found: somalier
[2022-03-07 23:46:15,923] multiqc [DEBUG ] No samples found: methylQA
[2022-03-07 23:46:15,930] multiqc [DEBUG ] No samples found: mosdepth
[2022-03-07 23:46:15,934] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2022-03-07 23:46:15,937] multiqc [DEBUG ] No samples found: qualimap
[2022-03-07 23:46:15,941] multiqc [DEBUG ] No samples found: preseq
[2022-03-07 23:46:15,946] multiqc [DEBUG ] No samples found: quast
[2022-03-07 23:46:15,950] multiqc [DEBUG ] No samples found: qorts
[2022-03-07 23:46:15,954] multiqc [DEBUG ] No samples found: rna_seqc
[2022-03-07 23:46:15,958] multiqc [DEBUG ] No samples found: rockhopper
[2022-03-07 23:46:15,962] multiqc [DEBUG ] No samples found: rsem
[2022-03-07 23:46:15,973] multiqc [DEBUG ] No samples found: rseqc
[2022-03-07 23:46:15,977] multiqc [DEBUG ] No samples found: busco
[2022-03-07 23:46:15,981] multiqc [DEBUG ] No samples found: goleft_indexcov
[2022-03-07 23:46:15,985] multiqc [DEBUG ] No samples found: disambiguate
[2022-03-07 23:46:15,990] multiqc [DEBUG ] No samples found: supernova
[2022-03-07 23:46:16,001] multiqc [DEBUG ] No samples found: deeptools
[2022-03-07 23:46:16,005] multiqc [DEBUG ] No samples found: sargasso
[2022-03-07 23:46:16,010] multiqc [DEBUG ] No samples found: verifybamid
[2022-03-07 23:46:16,014] multiqc [DEBUG ] No samples found: mirtrace
[2022-03-07 23:46:16,019] multiqc [DEBUG ] No samples found: happy
[2022-03-07 23:46:16,023] multiqc [DEBUG ] No samples found: mirtop
[2022-03-07 23:46:16,028] multiqc [DEBUG ] No samples found: homer
[2022-03-07 23:46:16,032] multiqc [DEBUG ] No samples found: macs2
[2022-03-07 23:46:16,036] multiqc [DEBUG ] No samples found: theta2
[2022-03-07 23:46:16,040] multiqc [DEBUG ] No samples found: snpeff
[2022-03-07 23:46:16,046] multiqc [DEBUG ] No samples found: gatk
[2022-03-07 23:46:16,050] multiqc [DEBUG ] No samples found: htseq
[2022-03-07 23:46:16,054] multiqc [DEBUG ] No samples found: bcftools
[2022-03-07 23:46:16,059] multiqc [DEBUG ] No samples found: featureCounts
[2022-03-07 23:46:16,064] multiqc [DEBUG ] No samples found: fgbio
[2022-03-07 23:46:16,075] multiqc [DEBUG ] No samples found: dragen
[2022-03-07 23:46:16,079] multiqc [DEBUG ] No samples found: dedup
[2022-03-07 23:46:16,083] multiqc [DEBUG ] No samples found: damageprofiler
[2022-03-07 23:46:16,101] multiqc [DEBUG ] No samples found: biobambam2
[2022-03-07 23:46:16,106] multiqc [DEBUG ] No samples found: mtnucratio
[2022-03-07 23:46:16,108] multiqc [DEBUG ] No samples found: picard
[2022-03-07 23:46:16,112] multiqc [DEBUG ] No samples found: prokka
[2022-03-07 23:46:16,116] multiqc [DEBUG ] No samples found: samblaster
[2022-03-07 23:46:16,123] multiqc [DEBUG ] No samples found: samtools
[2022-03-07 23:46:16,127] multiqc [DEBUG ] No samples found: sexdeterrmine
[2022-03-07 23:46:16,131] multiqc [DEBUG ] No samples found: bamtools
[2022-03-07 23:46:16,135] multiqc [DEBUG ] No samples found: jellyfish
[2022-03-07 23:46:16,141] multiqc [DEBUG ] No samples found: vcftools
[2022-03-07 23:46:16,146] multiqc [DEBUG ] No samples found: longranger
[2022-03-07 23:46:16,150] multiqc [DEBUG ] No samples found: stacks
[2022-03-07 23:46:16,154] multiqc [DEBUG ] No samples found: varscan2
[2022-03-07 23:46:16,166] multiqc [DEBUG ] No samples found: bbmap
[2022-03-07 23:46:16,170] multiqc [DEBUG ] No samples found: bismark
[2022-03-07 23:46:16,175] multiqc [DEBUG ] No samples found: biscuit
[2022-03-07 23:46:16,179] multiqc [DEBUG ] No samples found: hicexplorer
[2022-03-07 23:46:16,183] multiqc [DEBUG ] No samples found: hicup
[2022-03-07 23:46:16,187] multiqc [DEBUG ] No samples found: hicpro
[2022-03-07 23:46:16,192] multiqc [DEBUG ] No samples found: salmon
[2022-03-07 23:46:16,196] multiqc [DEBUG ] No samples found: kallisto
[2022-03-07 23:46:16,200] multiqc [DEBUG ] No samples found: slamdunk
[2022-03-07 23:46:16,204] multiqc [DEBUG ] No samples found: star
[2022-03-07 23:46:16,208] multiqc [DEBUG ] No samples found: hisat2
[2022-03-07 23:46:16,212] multiqc [DEBUG ] No samples found: tophat
[2022-03-07 23:46:16,216] multiqc [DEBUG ] No samples found: bowtie2
[2022-03-07 23:46:16,220] multiqc [DEBUG ] No samples found: bowtie1
[2022-03-07 23:46:16,224] multiqc [DEBUG ] No samples found: snpsplit
[2022-03-07 23:46:16,228] multiqc [DEBUG ] No samples found: kat
[2022-03-07 23:46:16,232] multiqc [DEBUG ] No samples found: leehom
[2022-03-07 23:46:16,237] multiqc [DEBUG ] No samples found: adapterRemoval
[2022-03-07 23:46:16,241] multiqc [DEBUG ] No samples found: clipandmerge
[2022-03-07 23:46:16,245] multiqc [DEBUG ] No samples found: cutadapt
[2022-03-07 23:46:16,250] multiqc [DEBUG ] No samples found: flexbar
[2022-03-07 23:46:16,255] multiqc [DEBUG ] No samples found: kaiju
[2022-03-07 23:46:16,259] multiqc [DEBUG ] No samples found: kraken
[2022-03-07 23:46:16,263] multiqc [DEBUG ] No samples found: malt
[2022-03-07 23:46:16,267] multiqc [DEBUG ] No samples found: trimmomatic
[2022-03-07 23:46:16,271] multiqc [DEBUG ] No samples found: sickle
[2022-03-07 23:46:16,275] multiqc [DEBUG ] No samples found: skewer
[2022-03-07 23:46:16,279] multiqc [DEBUG ] No samples found: sortmerna
[2022-03-07 23:46:16,283] multiqc [DEBUG ] No samples found: biobloomtools
[2022-03-07 23:46:16,287] multiqc [DEBUG ] No samples found: fastq_screen
[2022-03-07 23:46:16,291] multiqc [DEBUG ] No samples found: afterqc
[2022-03-07 23:46:16,295] multiqc [DEBUG ] No samples found: fastp
[2022-03-07 23:46:17,972] multiqc.modules.fastqc.fastqc [INFO ] Found 25 reports
[2022-03-07 23:46:18,501] multiqc [DEBUG ] No samples found: pycoqc
[2022-03-07 23:46:18,505] multiqc [DEBUG ] No samples found: minionqc
[2022-03-07 23:46:18,509] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2022-03-07 23:46:18,514] multiqc [DEBUG ] No samples found: clusterflow
[2022-03-07 23:46:18,518] multiqc [DEBUG ] No samples found: bcl2fastq
[2022-03-07 23:46:18,522] multiqc [DEBUG ] No samples found: interop
[2022-03-07 23:46:18,526] multiqc [DEBUG ] No samples found: ivar
[2022-03-07 23:46:18,530] multiqc [DEBUG ] No samples found: flash
[2022-03-07 23:46:18,534] multiqc [DEBUG ] No samples found: seqyclean
[2022-03-07 23:46:18,534] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'.
[2022-03-07 23:46:18,534] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2022-03-07 23:46:18,534] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2022-03-07 23:46:18,534] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2022-03-07 23:46:18,564] multiqc [INFO ] Compressing plot data
[2022-03-07 23:46:19,015] multiqc [INFO ] Report : multiqc_report.html
[2022-03-07 23:46:19,016] multiqc [INFO ] Data : multiqc_data
[2022-03-07 23:46:19,016] multiqc [DEBUG ] Moving data file from '/state/partition1/job-15748921/tmpgdinrq4a/multiqc_data' to '/scratch/gencore/logs/html/H722TBGXL/merged/multiqc_data'
[2022-03-07 23:46:19,129] multiqc [INFO ] MultiQC complete