H5YVCBGXY_n01_matt_54.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5YVCBGXY_n01_matt_54.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49867692
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT	1692742	3.394466300946913	TruSeq Adapter, Index 19 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	205310	65.31092	47
CGTATGC	207660	64.65797	46
CTCGTAT	199090	64.55664	44
GCCGTCT	206750	64.5259	51
TATGCCG	207950	64.42195	48
TCGTATG	208660	64.102684	45
CCGTCTT	210290	63.434555	52
TCTCGTA	201030	63.392586	43
ATGCCGT	214410	62.51757	49
TGCCGTC	216065	61.960136	50
ATCTCGT	204810	61.74521	42
CTGCTTG	217935	60.858395	59
GTCTTCT	221650	60.055992	54
CGTCTTC	222570	59.98745	53
TGCTTGA	221650	59.964268	60
GCTTGAA	223075	59.843468	61
AACGATC	209460	59.75663	38
ACGATCT	209705	59.440464	39
TCTGCTT	223610	59.339565	58
CGATCTC	211065	59.02287	40