FastQCFastQC Report
Wed 12 Feb 2020
H5YFHBGXF_n02_QG722.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5YFHBGXF_n02_QG722.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42172658
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTGTAG344050.06.4998269
GTGTAGA319600.06.43858670
GAGTGTA368650.06.14203269
TAGATCT226800.05.87897970
CTCGGTG158150.05.642752670
TGTAGAT366050.05.525955770
GTAGATC342650.05.178205569
AGAGTGT502600.05.15962169
GATCTCG237100.05.121744670
Produced by FastQC (version 0.11.5)