FastQCFastQC Report
Wed 12 Feb 2020
H5YFHBGXF_n01_QG818.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5YFHBGXF_n01_QG818.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37421818
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATGCC57400.014.20645847
TATGCCG58200.013.53012848
CGTATGC61550.012.6231246
TCGTATG79000.09.96773845
ATGCCGT85400.09.71252749
TGCCGTC119850.06.833128550
CTCGTAT110300.06.504575344
GCCGTCT129350.06.22309851
CTGCTTG121450.05.965639659
AGTCACG328650.05.933029770
GTCACGT325950.05.455916470
CAGTCAC389400.05.29510170
Produced by FastQC (version 0.11.5)