FastQCFastQC Report
Wed 12 Feb 2020
H5YFHBGXF_n01_QG710.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5YFHBGXF_n01_QG710.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39437948
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTCC189700.07.326249670
TATGCCG43800.06.79186148
TCACCCG248650.06.757892670
GTCACCC253950.06.699564570
GTATGCC42850.06.69741247
CGTCCGC139550.06.672834470
ACCCGTC207650.06.608649370
CGTATGC42750.06.467469746
CACCCGT212900.06.297695670
CCGTCCG197950.05.78296870
AGTCACC325000.05.50422470
CAGTCAC354300.05.40473970
GTCCGCA145350.05.12883236
Produced by FastQC (version 0.11.5)