FastQCFastQC Report
Wed 12 Feb 2020
H5YFHBGXF_n01_QG709.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5YFHBGXF_n01_QG709.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41422219
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCACAT397200.05.993311470
ATGTCAG284100.05.605278534
AGTCACA438650.05.43487969
CAGTCAC461300.05.36541270
ACATGTC349550.05.308034470
TCACATG399100.05.14023670
CACATGT366550.05.08095870
CATGTCA315300.05.074104370
Produced by FastQC (version 0.11.5)