FastQCFastQC Report
Wed 12 Feb 2020
H5YFHBGXF_n01_QG1122.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5YFHBGXF_n01_QG1122.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42208955
Sequences flagged as poor quality0
Sequence length76
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATGCC62700.013.73129247
CGTATGC61750.013.65914246
TATGCCG64200.013.19241148
TCGTATG76800.010.66345545
ATGCCGT89500.09.1111849
CTCGTAT106000.08.18821244
TGCCGTC124600.06.8254750
TCCTTTA187350.06.164675736
GCCGTCT136900.05.905476651
CCTTTAT188000.05.882741537
GTCACAT340350.05.667373770
TCTCGTA166550.05.568587343
AGTCACA375250.05.280084669
CAGTCAC388050.05.23234470
Produced by FastQC (version 0.11.5)