FastQCFastQC Report
Wed 28 Aug 2019
H5WYNBGXC_n02_BLG_BRD4_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5WYNBGXC_n02_BLG_BRD4_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29471589
Sequences flagged as poor quality0
Sequence length49
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1035100.3512196101811816No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGTCCG16190950.042.51887512
TGTCCGA16225550.042.4950113
GTCCGAC16242200.042.4729914
TCAACGC1824450.042.47036711
TCCGACA16295150.042.4658215
AGTCTTT2142450.042.46216210
GTCTTTG6720550.042.46054511
AACGCTT1820700.042.4532913
CAACGCT1824950.042.44091812
TCCTACC2789400.042.4385913
TGTCCTA2808350.042.4337911
GTCCTAC2808550.042.4275612
CCGACAA16326050.042.42149416
CGACAAT16337600.042.36208317
GGTCTTT2356050.042.3541510
TCTTTGT6736450.042.33688712
GACAATA16398750.042.3344218
CTGTCCT726950.042.33364510
TTTGTCA6736800.042.31742514
CCCAACT2786950.042.29104218