FastQCFastQC Report
Fri 4 Jun 2021
H5W5JDRXY_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5W5JDRXY_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1036350883
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGGAAG11139865510.74912530373171No Hit
CAGCATCA10421690110.056140512788081No Hit
AGTTCGGC996775709.61812949987133No Hit
GTAATCTT951315679.1794746895584No Hit
CCTGTGCG902208258.70562533211061No Hit
TGCGCAGC844562698.149389399420235No Hit
CATCACTT786029247.584586001650563No Hit
GGACACGT782561517.551125037252465No Hit
TACTCTTC761734827.350163274768011No Hit
ATGAGAAA710260106.853471267800329No Hit
ACAATTCA662927026.396742945603299No Hit
GGGGGGGG286047652.760142869487959No Hit
GTGTGGAG141366951.364083847651819No Hit
GTGGGGAG19219080.18544954527722443No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)