FastQCFastQC Report
Tue 4 Jun 2024
H5TVHDRX5_n02_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5TVHDRX5_n02_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1701138275
Sequences flagged as poor quality0
Sequence length151
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39393200.23156965297250748No Hit
GGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAGCAG27736410.16304618153394967No Hit
TGGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAGCA26620670.15648739665210343No Hit
GGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCGAGAT23721530.13944504305506852No Hit
GATGGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAG22726550.13359613579913132No Hit
CGATGGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCA22461930.1320405891167195No Hit
TGGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCGAGA22198880.13049427154885454No Hit
CGATGGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCG19389750.11398103425778248No Hit
GATGGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCGA19039640.11192294171383568No Hit
GGTTCGGGTGGATCTGGATCACAGGACCTGGCCTTCTGGTACGGCCCCAG18139920.10663401245263264No Hit
TGGTTCGGGTGGATCTGGATCACAGGACCTGGCCTTCTGGTACGGCCCCA17408620.10233512616721295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)