FastQCFastQC Report
Tue 4 Jun 2024
H5TVHDRX5_n02_Rep_3-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5TVHDRX5_n02_Rep_3-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences798777
Sequences flagged as poor quality0
Sequence length151
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAG13940.17451679254660563No Hit
GGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAGCAG13220.16550301273071208No Hit
TGGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAGCA13160.16475186441272094No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12340.15448617073350884No Hit
CGATGGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCA11840.14822660141691613No Hit
GGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCGAGAT11710.146599113394602No Hit
GATGGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCGA11330.14184184071399153No Hit
TGGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCGAGA10070.1260677260361778No Hit
CGATGGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCG9990.12506619494552296No Hit
ATGGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAGC9580.11993334810591692No Hit
TGGTTCGGGTGGATCTGGATCACAGGACCTGGCCTTCTGGTACGGCCCCA9000.11267224769866933No Hit
GGTTCGGGTGGATCTGGATCACAGGACCTGGCCTTCTGGTACGGCCCCAG8770.10979284581303667No Hit
GATGGTTCGGGTGGATCTGGATCACAGGACCTGGCCTTCTGGTACGGCCC8370.1047851903597625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)