FastQCFastQC Report
Tue 4 Jun 2024
H5TVHDRX5_n02_Rep_3-1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5TVHDRX5_n02_Rep_3-1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99989
Sequences flagged as poor quality0
Sequence length151
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAG5600.5600616067767454No Hit
GATGGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCGA4310.43104741521567375No Hit
GATGGTTCGGGTGGATCTGGATCACAGGACCTGGCCTTCTGGTACGGCCC3740.3740411445258979No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2090.20902299252917822No Hit
GATGGTTCGGGTGGATCTGGATCAAGGTGCGCCACCCCCCTGAAGGACGA2020.20202222244446888No Hit
GATGGTTCGGGTGGATCTGGATCATGGTACAAGAACGGCGTGAAGATCGA2010.20102211243236753No Hit
GGTTCGGGTGGATCTGGATCAACCTACACCAGGAGCGTGGCCACCAGCAG1370.13701507165788238No Hit
GGTTCGGGTGGATCTGGATCATGCGACAGCAGCGGCCACGCCCCCGAGAT1270.12701397153686905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)