FastQCFastQC Report
Tue 4 Jun 2024
H5TVHDRX5_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5TVHDRX5_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1701138275
Sequences flagged as poor quality0
Sequence length64
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTC28273779316.620506231335018No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAG23201997113.63910120710205No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCA1573327859.248677036556597No Hit
CGATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCT1462751128.598660917202631No Hit
ATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCA825407364.852088581688046No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGGGCTGCTAAAGCGCATGCTCCAGA701727704.125047977067002No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCCAG450406352.6476763036796642No Hit
ATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAGCGGGGCTGCTAAAGCGCATGCTCC431019192.5337104945216753No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGAACTGTAAAGCGCATGCTCCAGA128742170.7568001490061118No Hit
CGATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGAACTGTAAAGCGCATGCTCC119309400.7013503943411067No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCGGGGCTGCTAAAGCGCATGCTCCAGACTGC84843140.49874334877333826No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAA83377080.4901252368799944No Hit
CGATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCGGGGCTGCTAAAGCGCATGCTCCAGAC80808530.4750262291288461No Hit
CGATGAGGCCAGAGGCCACTTGTGTAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGG67195730.39500451543246834No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAAGCGCATGCTCCAGACTGCCTTGGGA66057170.38831158507676283No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGAACTGTAAAGCGCATGCTCCAGAC40422960.2376230115685334No Hit
ATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAGCGGAACTGTAAAGCGCATGCTCCAG39172570.23027269784991464No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAAGCGCATGCTCCAGACTGCCTTGGGAA34647620.20367315525835192No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCT22740620.13367884512503841No Hit
CGATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGCGGGGCTGCTAAAGCGCATGCTCCAGACTG22306390.1311262601507217No Hit
GAGGCCAGAGGCCACTTGTGTAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAAAA22183580.13040433177014962No Hit
GAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCC22079590.12979303519580146No Hit
ATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCGGGGCTGCTAAAGCGCATGCTCCAGACTG21216290.1247181978784176No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAA20806430.12230886992416887No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCACAGCGGGGCTGCTAAAGCGCATGCTCC20324200.11947412093822884No Hit
CGATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAAGCGGGGCTGCTAAAGCGCATGC20177290.11861052271015418No Hit
TGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCAAAGCGGGGCTGCTAAAGCGCATGCTCC20095740.11813113781123995No Hit
CGATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCTAAAGCGCATGCTCCAGACTGCCTTGG20086300.1180756455556207No Hit
CGATGAGGCCAGAGGCCACTTGTGTAGCGCCAAGTGCCCACAGCGGGGCTGCTAAAGCGCATGC19830400.1165713586686538No Hit
ATGAGGCCAGAGGCCACTTGTGTAGCGGGGCTGCTAAAGCGCATGCTCCAGACTGCCTTGGGAA18282550.10747245105633757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)