H5TT7BCXX l02n02 vs6a.342000000335fd.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5TT7BCXX l02n02 vs6a.342000000335fd.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1155762
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT	27668	2.3939184711039125	Illumina Single End PCR Primer 1 (100% over 51bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTA	1932	0.1671624434788477	Illumina Single End PCR Primer 1 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	3425	38.4962	45
CGCCGTA	465	38.22566	45
GGTCGCC	3575	38.139713	43
GTGGTCG	3630	38.057705	41
TGGTCGC	3595	37.802357	42
GATCGGA	3935	37.569817	1
CTCGGTG	3745	37.48984	37
GGTGGTC	3705	37.287304	40
TCTCGGT	3775	37.13231	36
ATCTCGG	3850	36.87648	35
TCGGTGG	3855	36.71192	38
CGGTGGT	3800	36.710384	39
GATCTCG	3900	36.51909	34
GTCGCCG	3765	36.274765	44
GTAGATC	4045	35.710617	31
GTCGTGT	4020	35.652847	13
AGATCTC	4015	35.585167	33
GTAGGGA	4090	35.48275	18
GAGTGTA	4180	35.472355	27
GCGTCGT	4060	35.467846	11