H5TT7BCXX l02n02 vs1.342000000335c6.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5TT7BCXX l02n02 vs1.342000000335c6.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3025371
Sequences flagged as poor quality	0
Sequence length	51
%GC	22

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT	269404	8.904825226393722	Illumina Single End PCR Primer 1 (100% over 51bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGG	6147	0.20318169242714365	Illumina Single End PCR Primer 1 (98% over 50bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGACGT	3394	0.11218458827033115	Illumina Single End PCR Primer 1 (98% over 51bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTAGCCGT	3205	0.10593742056759319	Illumina Single End PCR Primer 1 (98% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCCGT	29645	44.48324	45
GTGGTCG	32175	44.16019	41
TCGGTGG	32700	44.13238	38
GTCGCCG	31330	44.108833	44
GGTCGCC	31310	44.108265	43
CGGTGGT	32510	44.10655	39
CTCGGTG	32425	44.097267	37
GGTGGTC	32270	44.085964	40
TGGTCGC	31595	44.080692	42
TCTCGGT	32420	44.04161	36
AGATCTC	32650	44.041466	33
GATCTCG	32655	44.03472	34
ATCTCGG	32765	43.893757	35
GTAGATC	33530	43.858585	31
TAGATCT	33390	43.799896	32
GAGTGTA	34350	43.257008	27
GTGTAGA	34335	43.144848	29
GTAGGGA	34575	42.97551	18
GGGAAAG	34800	42.96273	21
TGTAGGG	34450	42.844074	17