H5TT7BCXX l02n01 vs1.341000000335c9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5TT7BCXX l02n01 vs1.341000000335c9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3025371
Sequences flagged as poor quality	0
Sequence length	51
%GC	23

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATG	274492	9.073002947407112	TruSeq Adapter, Index 13 (97% over 40bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14726	0.48675022005565605	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATATCGTATG	12628	0.4174033531755279	TruSeq Adapter, Index 13 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAAACTCGTATG	10512	0.3474615179427581	TruSeq Adapter, Index 13 (97% over 40bp)
TCTGAACTCCAGTCACATGTCAGAATCTCGTATGCCGTCTTCTGCTTGAAA	5925	0.19584374941122923	RNA PCR Primer, Index 40 (96% over 30bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3648	0.12058025280205305	No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3084	0.10193791108594616	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCAAC	34110	43.251217	34
GTCACAG	34590	43.19742	29
TCACAGT	34545	43.188557	30
GTCAACA	34150	43.09514	35
CACAGTC	34320	43.084904	31
ACAATCT	30820	43.06462	39
CAATCTC	30695	43.049416	40
CAGTCAA	34510	43.030247	33
ACAGTCA	34585	42.94344	32
AACAATC	31040	42.765938	38
TCAACAA	34400	42.60465	36
CAACAAT	32490	42.540096	37
ACGTCTG	36805	42.070293	15
CGTCTGA	36895	42.028652	16
ACACGTC	36940	42.007908	13
GTCTCCC	75	41.99926	42
CACGTCT	36850	41.982285	14
GTCTGAA	37085	41.958927	17
GCACACG	37140	41.933144	11
CACACGT	37120	41.89512	12