H5TH7BCX2_l02n02_wt-3.352000000b0de8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5TH7BCX2_l02n02_wt-3.352000000b0de8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34150
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	1513	4.430453879941435	Illumina Single End PCR Primer 1 (100% over 51bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT	42	0.12298682284040995	Illumina Single End PCR Primer 1 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCACACG	95	0.0	45.000004	18
ACACGTC	55	1.8189894E-12	45.0	20
ACACGTA	20	6.9374684E-4	45.0	20
ACGTCTG	40	6.486516E-9	45.0	22
CACGTCA	20	6.9374684E-4	45.0	21
CACGTAG	20	6.9374684E-4	45.0	21
ACGTAGA	20	6.9374684E-4	45.0	22
AGAGCAC	105	0.0	45.0	15
GGTAGAT	20	6.9374684E-4	45.0	31
AGCACAC	100	0.0	45.0	17
GTGGTCG	255	0.0	43.235294	42
GAGCACA	105	0.0	42.857143	16
CGGTGGT	265	0.0	42.45283	40
TGGTCGC	260	0.0	42.403843	43
CACACGT	80	0.0	42.1875	19
GTCGCCG	265	0.0	41.603775	45
GGTGGTC	280	0.0	40.17857	41
TCGGTGG	275	0.0	40.090908	39
CTCGGTG	275	0.0	40.090908	38
GGTCGCC	275	0.0	40.090908	44