FastQCFastQC Report
Tue 16 Jan 2018
H5TH7BCX2_l01n01_gal-ssb_glu_doxrap-3.351000000b0ef7.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5TH7BCX2_l01n01_gal-ssb_glu_doxrap-3.351000000b0ef7.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5762
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGATCGGAAGAGCAC621.076015272474835TruSeq Adapter, Index 3 (97% over 37bp)
GCACACGTCTGAACTCCAGTCACTTAGATCGGAAGAGCACACGTCTGAACT60.10413051023950018TruSeq Adapter, Index 3 (96% over 27bp)

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)