H5LJCBGXC_n01_mb233.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5LJCBGXC_n01_mb233.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	33243057
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	214451	0.6451001181991175	TruSeq Adapter, Index 6 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	26295	62.291504	42
TCGTATG	26575	62.25717	43
TCTCGTA	26400	62.123295	41
CGTATGC	26740	61.990814	44
CGCCAAT	27005	61.651245	33
ATGCCGT	27090	60.999306	47
TATCTCG	27050	60.66466	39
TATGCCG	27455	60.300007	46
ACGCCAA	28060	59.560383	32
GTCACGC	28125	59.433125	29
TGCCGTC	27780	59.416916	48
ATCTCGT	27885	58.848095	40
GCCGTCT	27990	58.78356	49
CCGTCTT	28125	58.564064	50
TCACGCC	29455	56.750103	30
CGTCTTC	29115	56.721317	51
AGTCACG	29790	56.13475	28
CACGCCA	30130	55.641357	31
CGTCTGA	30615	55.41336	16
ACACGTC	31555	54.026005	13