FastQCFastQC Report
Fri 22 Nov 2024
H5L3LBGYW_n01_late_L4_herms.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5L3LBGYW_n01_late_L4_herms.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15197264
Sequences flagged as poor quality0
Sequence length15
%GC36

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGTATGCAGCGCG11736307.722640075213539No Hit
CAAAAAAAAAAAAAA8789335.783494976464184No Hit
AAAAAAAAAAAAAAA7917125.209569301421625No Hit
CCAAAAAAAAAAAAA3829662.5199667519100806No Hit
TAAAAAAAAAAAAAA1478940.9731620112672913No Hit
ACAAAAAAAAAAAAA1184250.7792521074846104No Hit
GAAAAAAAAAAAAAA970300.6384701877916972No Hit
CTAAAAAAAAAAAAA903840.5947386319011106No Hit
CAAGTATGCCGCGCG891480.5866055890060211No Hit
CCCAAAAAAAAAAAA820020.5395839672193626No Hit
CCAGTATGCAGCGCG720140.473861610879432No Hit
CTAGTATGCAGCGCG682910.44936378021728124No Hit
ATAAAAAAAAAAAAA667030.43891453093135707No Hit
CAAGTATGCAGCGCC663390.43651936295901683No Hit
AAGTATGCAGCGCGC564110.37119181452661476No Hit
ACCAAAAAAAAAAAA497950.3276576625897925No Hit
GCAAAAAAAAAAAAA459930.30264000151606235No Hit
TCCAAAAAAAAAAAA427490.2812940539823484No Hit
TCAAAAAAAAAAAAA421870.27759601991516364No Hit
GAAGTATGCAGCGCG369520.24314902998329174No Hit
AATAAAAAAAAAAAA368560.24251733733124595No Hit
CACAAAAAAAAAAAA363350.2390890886675391No Hit
AACAAAAAAAAAAAA306710.20181922219683754No Hit
AAAGTATGCAGCGCG305290.20088484348235314No Hit
CAAGGATGCAGCGCG303220.1995227562013794No Hit
CATAAAAAAAAAAAA276150.18171033944004655No Hit
CAAGTATGCAGCGGG258160.16987268234598016No Hit
GCCAAAAAAAAAAAA258020.16978056050089016No Hit
CATGTATGCAGCGCG250670.1649441636336646No Hit
CAAATAAAAAAAAAA243530.16024594953407403No Hit
TTAAAAAAAAAAAAA225410.14832275072670975No Hit
CAAGTCTGCAGCGCG224340.1476186766249504No Hit
AAAATAAAAAAAAAA223960.14736863161684893No Hit
CAAGTATGCAGCCCG220190.14488792193121078No Hit
CGAAAAAAAAAAAAA214840.14136755142241392No Hit
CCTAAAAAAAAAAAA209400.13778795972748778No Hit
GTAAAAAAAAAAAAA207090.1362679492835026No Hit
CACGTATGCAGCGCG205930.13550465399561396No Hit
CAAGTATGCAGCGCT196710.1294377724832575No Hit
AAAACAAAAAAAAAA188450.12400258362294687No Hit
GTAGTATGCAGCGCG180690.11889640135224341No Hit
CCAAGTATGCAGCGC172370.1134217317011799No Hit
ATCAAAAAAAAAAAA163930.10786810046861067No Hit
CAAACAAAAAAAAAA163490.10757857466975634No Hit
CAAGTATGCAGCCCC158490.10428850877368452No Hit
CAAGTATGCAGCGAG157170.10341993137712156No Hit
CTCAAAAAAAAAAAA156160.10275533806611506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)