FastQCFastQC Report
Thu 16 Mar 2023
H5L23AFX5_n02_37SS.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5L23AFX5_n02_37SS.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12188469
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAAATTAAAGTTCAACTGTTTAATAAAAACATTGTTTTTAGAGTATAA207220.17001314931350278No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG169770.1392873871197441No Hit
GTTTAATAAAAACATTGTTTTTAGAGTATAATTTAAAATTAGTTCTGCTC169130.1387623006630283No Hit
TAAAAACATTGTTTTTAGAGTATAATTTAAAATTAGTTCTGCTCAATGAA141070.11574054132639627No Hit
ATTTAAATAGCTGCAGTAAATTGACTGTACAAAGGTAGCATAATCAATAG138010.113229971705224No Hit
GTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAATGATT130980.10746222515723672No Hit
GGATAGTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAA123130.10102171158658238No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)