FastQCFastQC Report
Thu 16 Mar 2023
H5L23AFX5_n02_37SP.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5L23AFX5_n02_37SP.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13059527
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAAATTAAAGTTCAACTGTTTAATAAAAACATTGTTTTTAGAGTATAA226290.1732758008770149No Hit
GTTTAATAAAAACATTGTTTTTAGAGTATAATTTAAAATTAGTTCTGCTC171190.1310843800085562No Hit
ATTTAAATAGCTGCAGTAAATTGACTGTACAAAGGTAGCATAATCAATAG153170.11728602421818186No Hit
GTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAATGATT141460.10831939012798857No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)