FastQCFastQC Report
Thu 16 Mar 2023
H5L23AFX5_n02_37BB.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5L23AFX5_n02_37BB.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17578682
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAAATTAAAGTTCAACTGTTTAATAAAAACATTGTTTTTAGAGTATAA261330.1486630226316171No Hit
GTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAATGATT209020.11890538778732103No Hit
GTTTAATAAAAACATTGTTTTTAGAGTATAATTTAAAATTAGTTCTGCTC207800.11821136533444315No Hit
GGATAGTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAA206130.11726135099320871No Hit
GCATAATTTAATTTTGTAGTATATATATAATTGGGATTATGACCTCGATG193080.1098375862308676No Hit
ATTTAAATAGCTGCAGTAAATTGACTGTACAAAGGTAGCATAATCAATAG184640.10503631614702398No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)