FastQCFastQC Report
Thu 16 Mar 2023
H5L23AFX5_n02_33SS.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5L23AFX5_n02_33SS.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11983060
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATAGTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAA152720.12744657875367393No Hit
GTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAATGATT149920.1251099468750052No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG149230.12453413401919042No Hit
CAAAAATTAAAGTTCAACTGTTTAATAAAAACATTGTTTTTAGAGTATAA124970.10428888781329644No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)