FastQCFastQC Report
Thu 16 Mar 2023
H5L23AFX5_n02_33PP.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5L23AFX5_n02_33PP.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14508376
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATAGTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAA202370.13948494304255693No Hit
GTTAAAAGAAAAGAAACTTTAATAAATATTTTTTCCATAGATGAATGATT183880.12674058075142247No Hit
CAAAAATTAAAGTTCAACTGTTTAATAAAAACATTGTTTTTAGAGTATAA179870.12397666010310182No Hit
GTTTAATAAAAACATTGTTTTTAGAGTATAATTTAAAATTAGTTCTGCTC147940.10196868346946618No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)