FastQCFastQC Report
Thu 16 Mar 2023
H5L23AFX5_n01_33PS.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5L23AFX5_n01_33PS.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11666821
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTTCATTCTAGACTTCATTTAAAAGACTATTGATTATGCTACCTTTG166960.14310667833165522No Hit
TACAAAAACAACTATTTTTTCATCATTACCCAATGCTTTACTTGCAAATT147500.12642689898130777No Hit
CAAAAACAACTATTTTTTCATCATTACCCAATGCTTTACTTGCAAATTTT142940.12251837925686868No Hit
GTCTTTTCGTCCCATAAATTTATTTAAGTTTTCTTACTTAAAAAATAAAT139280.11938127789909522No Hit
CAAATTTCTGGTGGTACAAAAACAACTATTTTTTCATCATTACCCAATGC136790.11724702041798704No Hit
CTTCATTCTAGACTTCATTTAAAAGACTATTGATTATGCTACCTTTGTAC126080.10806714185466633No Hit
ACAAAAACAACTATTTTTTCATCATTACCCAATGCTTTACTTGCAAATTT117850.1010129494572686No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)