FastQCFastQC Report
Fri 12 May 2023
H5KKWDRX3_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5KKWDRX3_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences943987821
Sequences flagged as poor quality0
Sequence length10
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAACATGCG69045346173.14220010471935No Hit
AACTTCTTTG20863126422.10105462790711No Hit
GGGGGGGGGG288040173.05131235374275No Hit
AAAAAATTAG18138330.192145805237036No Hit
AACTTCTTGG10854490.11498548772060906No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)